A tool for quantifying the expression of transcripts using RNA-seq data with ultra-fast alignment-free methods.

A comprehensive web-based tool for metabolomics data analysis, visualization and functional interpretation.

A suite of programs for interacting with high-throughput sequencing data stored in SAM/BAM/CRAM format.

An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

An open, web-based platform for accessible, reproducible, and transparent computational biological research.

An open source software platform for visualizing complex networks and integrating these with any type of attribute data.

Basic Local Alignment Search Tool finds regions of local similarity between sequences.

A quantitative proteomics software package designed for analyzing large mass-spectrometric data sets.

Differential gene expression analysis based on the negative binomial distribution. Provides methods to test for differential expression.

Spliced Transcripts Alignment to a Reference. STAR is an ultrafast universal RNA-seq aligner.